The major fraction of code we developed is open source. This page highlights the most impactful projects we are working on.

• https://github.com/GuckLab
  Selected repositories:
  • https://github.com/GuckLab/impose: Align microscopy images using custom-defined structural patterns and superimpose those on data from other imaging modalities.
  • https://github.com/GuckLab/MPL-Data-Cast: Convert and transfer data from measurement PCs to network shares at MPL

Tools for the analysis of deformability cytometry experiments

• https://github.com/DC-analysis
  Selected repositories
  • https://github.com/DC-analysis/ChipStream: GUI for DC data postprocessing (background computation, segmentation, feature extraction)
  • https://github.com/DC-analysis/DC-tools-for-Windows: Tools for automating data analysis in deformability cytometry
  • https://github.com/DC-analysis/DCKit: graphical toolkit for the management of RT-DC data
  • https://github.com/DC-analysis/dclab: Python library for the post-measurement analysis of real-time deformability cytometry (RT-DC) data sets
  • https://github.com/DC-analysis/dcnum: numerics toolbox for imaging deformability cytometry
  • https://github.com/DC-analysis/fcswrite: Python package for writing flow cytometry standard (.fcs) files
• https://github.com/DCOR-dev
  Selected repositories:
  • https://github.com/DCOR-dev/DCOR-Aid: GUI for managing data on DCOR
  • https://github.com/DCOR-dev/DCOR-help: Issue tracker of general questions/issues/problems regarding DCOR
• https://github.com/ZELLMECHANIK-DRESDEN/ShapeOut2: graphical user interface for analysis and visualization of RT-DC data sets

Analysis of refractive index imaging

• https://github.com/RI-imaging
  Selected repositories:
  • https://github.com/RI-imaging/nrefocus: python library for numerical focusing (refocusing, autofocusing) of complex wave fields
  • https://github.com/RI-imaging/qpimage: Python library for manipulating quantitative phase images
  • https://github.com/RI-imaging/DryMass: manipulation and analysis of phase microscopy data

Analysis of Brillouin Microscopy

• https://github.com/BrillouinMicroscopy

Analysis of AFM measurements

• https://github.com/AFM-analysis
  Selected repositories:
  • https://github.com/AFM-analysis/PyJibe: GUI for AFM data analysis with an emphasis on biological specimens
  • https://github.com/AFM-analysis/nanite: Fitting and machine-learning based rating of AFM force-indentation data
  • https://github.com/AFM-analysis/afmformats: Python library for reading common AFM file formats
  • https://github.com/AFM-analysis/igor2: Python3 Igor Pro pxp and ibw file reader